Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may optionally include the physical locations or genetic map distances of each SNP on the plot. The methods are described in Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.
| Version: | 1.0-4 |
| Depends: | R (≥ 4.0) |
| Imports: | grid, genetics, snpStats, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR |
| Published: | 2020-10-08 |
| Author: | Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut] |
| Maintainer: | Brad McNeney <mcneney at sfu.ca> |
| License: | GPL-3 |
| URL: | https://sfustatgen.github.io/LDheatmap/ |
| NeedsCompilation: | yes |
| Citation: | LDheatmap citation info |
| Materials: | ChangeLog |
| CRAN checks: | LDheatmap results |
| Reference manual: | LDheatmap.pdf |
| Vignettes: |
LDheatmap |
| Package source: | LDheatmap_1.0-4.tar.gz |
| Windows binaries: | r-devel: LDheatmap_1.0-4.zip, r-release: LDheatmap_1.0-4.zip, r-oldrel: not available |
| macOS binaries: | r-release: LDheatmap_1.0-4.tgz, r-oldrel: not available |
| Old sources: | LDheatmap archive |
Please use the canonical form https://CRAN.R-project.org/package=LDheatmap to link to this page.