NEWS

backbone 1.3.1

• speedups to sdsm

backbone 1.3.0

• update sdsm to use the bicm model - a new, fast, approximation of the probabilities
• remove all other models from sdsm
• if an older model is called in sdsm, show warning that model has changed
• add new function bipartite.null which lets the user pick if they want rows/cols to be fixed or vary
• update fwer m parameter

backbone 1.2.2

• fix fdsm to accept all graph inputs
• rename sdsm “chi2” model to “rcn”
• universal function can now return weighted projection
• universal function now has a narrative parameter
• class.convert now drops (with warning) rows and columns with zero sum before sending output to universal, sdsm, fdsm, or hyperg.
• update citations

backbone 1.2.1

• add narrative parameter to backbone.extract for suggested manuscript text
• add scobit model to sdsm
• add time unit to runtime calculation
• minor spelling and comment fixes

backbone 1.2.0

• add support for sparse matrix, igraph, network, and edgelist objects (see ‘class.convert’)
• add family-wise error rate test corrections (see ‘backbone.extract’)
• sdsm: add multiple methods for computing initial probabilities (see ‘sdsm’ details) one of which uses convex optimization (see ‘polytope’)
• sdsm: update poisson binomial computation method to increase speed (see ‘sdsm’ and ‘rna’)
• add more descriptives to summary dataframe output of backbone object
• update documentation of functions
• update vignette to reflect package changes
• bug fixes for R 4.0.0

backbone 1.1.0

• add support for sparse matrices
• add support for speedglm in sdsm
• add poisson binomial approx. in sdsm
• add summary output to sdsm, fdsm, hyperg, universal
• update vignette to reflect package changes
• bug fixes

backbone 1.0.0

• initial release