microbial: Do 16s Data Analysis and Generate Figures

Provides functions to enhance the available statistical analysis procedures in R by providing simple functions to analysis and visualize the 16S rRNA data.Here we present a tutorial with minimum working examples to demonstrate usage and dependencies.

Version: 0.0.17
Depends: R (≥ 3.5.0)
Imports: dplyr, plyr, magrittr, broom, phyloseq, vegan, rlang, tools, ggplot2, ggpubr, DESeq2, dada2, SummarizedExperiment, S4Vectors, Biostrings, rstatix, tidyr, DECIPHER, phangorn, MASS, randomForest, edgeR, knitr
Suggests: markdown, rmarkdown
Published: 2020-12-07
Author: Kai Guo [aut, cre], Pan Gao [aut]
Maintainer: Kai Guo <guokai8 at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: microbial results


Reference manual: microbial.pdf
Vignettes: microbial
Package source: microbial_0.0.17.tar.gz
Windows binaries: r-devel: microbial_0.0.17.zip, r-release: microbial_0.0.17.zip, r-oldrel: microbial_0.0.17.zip
macOS binaries: r-release: not available, r-oldrel: not available


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