polyfreqs: Bayesian Population Genomics in Autopolyploids

Implements a Gibbs sampling algorithm to perform Bayesian inference on biallelic SNP frequencies, genotypes and heterozygosity (observed and expected) in a population of autopolyploids. See the published paper in Molecular Ecology Resources: Blischak et al. (2016) <doi:10.1111/1755-0998.12493>.

Version: 1.0.2
Depends: R (≥ 3.0)
Imports: Rcpp
LinkingTo: Rcpp
Suggests: knitr, coda
Published: 2016-12-16
Author: Paul Blischak [aut, cre]
Maintainer: Paul Blischak <blischak.4 at osu.edu>
BugReports: https://github.com/pblischak/polyfreqs/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/pblischak/polyfreqs
NeedsCompilation: yes
Citation: polyfreqs citation info
Materials: README
CRAN checks: polyfreqs results


Reference manual: polyfreqs.pdf
Vignettes: An introduction to polyfreqs
Package source: polyfreqs_1.0.2.tar.gz
Windows binaries: r-devel: polyfreqs_1.0.2.zip, r-release: polyfreqs_1.0.2.zip, r-oldrel: polyfreqs_1.0.2.zip
macOS binaries: r-release: polyfreqs_1.0.2.tgz, r-oldrel: polyfreqs_1.0.2.tgz
Old sources: polyfreqs archive


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