Last updated on 2021-07-01 01:49:08 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 8.38 | 143.78 | 152.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 5.96 | 107.87 | 113.83 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 188.81 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 178.86 | OK | |||
| r-devel-windows-x86_64 | 0.0.1 | 40.00 | 212.00 | 252.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.0.1 | OK | ||||
| r-patched-linux-x86_64 | 0.0.1 | 10.91 | 136.75 | 147.66 | OK | |
| r-patched-solaris-x86 | 0.0.1 | 148.50 | ERROR | |||
| r-release-linux-x86_64 | 0.0.1 | 5.82 | 136.86 | 142.68 | OK | |
| r-release-macos-arm64 | 0.0.1 | ERROR | ||||
| r-release-macos-x86_64 | 0.0.1 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 0.0.1 | 16.00 | 215.00 | 231.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.0.1 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.1 | 16.00 | 189.00 | 205.00 | NOTE |
Version: 0.0.1
Check: installed package size
Result: NOTE
installed size is 8.2Mb
sub-directories of 1Mb or more:
doc 7.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinUtils)
>
> test_check("clinUtils")
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_getClinDT.R:52:2): basic ────────────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:52:8
── Error (test_getClinDT.R:115:2): Colnames ────────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:115:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:238:3): Filter boxes ────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:238:16
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:257:3): Search box ──────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:257:16
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:273:2): Page length ─────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:273:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:288:2): Fixed columns ───────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:288:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:302:2): Columns widths ──────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:302:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:333:2): Specification of extra options ──────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:333:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:364:2): Expand variables ────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:364:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:414:2): Expand variables with all column options ────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:414:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:460:2): Expand cells ────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:460:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:491:2): Escape cells ────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:491:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:527:2): Row grouping ────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:527:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:561:2): Vertical alignment ──────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:561:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:589:2): Buttons ─────────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:589:8
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:616:3): x-scrolling ─────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. └─clinUtils:::exportAndGetTableJSON(dt) test_getClinDT.R:616:16
2. └─htmlwidgets::saveWidget(dt, file = file) test_getClinDT.R:30:8
── Error (test_getClinDT.R:651:2): Export ──────────────────────────────────────
Error: Saving a widget with selfcontained = TRUE requires pandoc. For details see:
https://github.com/rstudio/rmarkdown/blob/master/PANDOC.md
Backtrace:
█
1. ├─testthat::expect_silent(dt <- getClinDT(data, file = file)) test_getClinDT.R:651:8
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─clinUtils::getClinDT(data, file = file)
10. └─htmlwidgets::saveWidget(widget = tableDT, file = basename(file))
── Error (test_knitPrintListPlots.R:140:7): Knitting list of interactive plots with 'knitPrintListObjects' ──
Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
Backtrace:
█
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:140:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
── Error (test_knitPrintListPlots.R:154:7): Knitting list of interactive plots with 'knitPrintListObjects' ──
Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
Backtrace:
█
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:154:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
── Error (test_knitPrintListPlots.R:176:7): Knitting list of interactive flextable with 'knitPrintListObjects' ──
Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
Backtrace:
█
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:176:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
[ FAIL 20 | WARN 1 | SKIP 0 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'htmltools'
The following object is masked from 'package:pander':
p
Import AE dataset.
Import CM dataset.
Import DM dataset.
Import EX dataset.
Import LB dataset.
Import MH dataset.
Import SV dataset.
Import VS dataset.
Quitting from lines 301-322 (clinUtils-vignette.Rmd)
Error: processing vignette 'clinUtils-vignette.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘clinUtils-vignette.Rmd’
SUMMARY: processing the following file failed:
‘clinUtils-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:176:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
[ FAIL 20 | WARN 1 | SKIP 0 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 0.0.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘clinUtils-vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'htmltools'
The following object is masked from 'package:pander':
p
Import AE dataset.
Import CM dataset.
Import DM dataset.
Import EX dataset.
Import LB dataset.
Import MH dataset.
Import SV dataset.
Import VS dataset.
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Quitting from lines 301-322 (clinUtils-vignette.Rmd)
Error: processing vignette 'clinUtils-vignette.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘clinUtils-vignette.Rmd’
SUMMARY: processing the following file failed:
‘clinUtils-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/7s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:176:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
[ FAIL 20 | WARN 1 | SKIP 0 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
1. ├─testthat::expect_silent(...) test_knitPrintListPlots.R:176:6
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat:::.capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─rmarkdown::render(file, quiet = TRUE)
10. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE)
11. └─rmarkdown:::stop2(paste(msg, collapse = " "))
[ FAIL 20 | WARN 1 | SKIP 0 | PASS 234 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64