Last updated on 2021-07-01 01:49:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | 3.91 | 209.06 | 212.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 3.51 | 152.43 | 155.94 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 145.23 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 247.09 | NOTE | |||
| r-devel-windows-x86_64 | 0.9.1 | 7.00 | 212.00 | 219.00 | NOTE | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.9.1 | ERROR | ||||
| r-patched-linux-x86_64 | 0.9.1 | 4.38 | 196.41 | 200.79 | OK | |
| r-patched-solaris-x86 | 0.9.1 | 307.40 | WARN | |||
| r-release-linux-x86_64 | 0.9.1 | 4.27 | 197.88 | 202.15 | OK | |
| r-release-macos-arm64 | 0.9.1 | WARN | ||||
| r-release-macos-x86_64 | 0.9.1 | WARN | ||||
| r-release-windows-ix86+x86_64 | 0.8.0 | 37.00 | 162.00 | 199.00 | WARN | |
| r-oldrel-macos-x86_64 | 0.9.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.9.1 | 7.00 | 221.00 | 228.00 | NOTE |
Version: 0.9.1
Check: installed package size
Result: NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
doc 8.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.9.1
Check: data for non-ASCII characters
Result: NOTE
Note: found 11 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.9.1
Check: examples
Result: ERROR
Running examples in 'pct-Ex.R' failed
The error most likely occurred in:
> ### Name: uptake_pct_govtarget
> ### Title: Calculate cycling uptake for UK 'Government Target' scenario
> ### Aliases: uptake_pct_govtarget uptake_pct_govtarget_2020
> ### uptake_pct_godutch_2020 uptake_pct_ebike_2020
> ### uptake_pct_govtarget_school2 uptake_pct_godutch_school2
>
> ### ** Examples
>
> distance = 15
> gradient = 2
> logit_pcycle = -3.959 + # alpha
+ (-0.5963 * distance) + # d1
+ (1.866 * sqrt(distance)) + # d2
+ (0.008050 * distance^2) + # d3
+ (-0.2710 * gradient) + # h1
+ (0.009394 * distance * gradient) + # i1
+ (-0.05135 * sqrt(distance) * gradient) # i2
> boot::inv.logit(logit_pcycle)
[1] 0.0107377
> uptake_pct_govtarget(15, 2)
[1] 0.0107377
> l = routes_fast_leeds
> pcycle_scenario = uptake_pct_govtarget(l$length, l$av_incline)
> pcycle_scenario_2020 = uptake_pct_govtarget_2020(l$length, l$av_incline)
> plot(l$length, pcycle_scenario, ylim = c(0, 0.2))
> points(l$length, pcycle_scenario_2020, col = "blue")
>
> # compare with published PCT data:
> l_pct_2020 = get_pct_lines(region = "isle-of-wight")
Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet, :
GDAL Error 1: SSL certificate problem: unable to get local issuer certificate
Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/l.geojson"; The file doesn't seem to exist.
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.9.1
Check: tests
Result: ERROR
Running 'skip-heavy.R'
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
== Failed tests ================================================================
-- Error (test-get-pct.R:11:3): get_pct_ works ---------------------------------
Error: Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/isle-of-wight/z.geojson"; The file doesn't seem to exist.
Backtrace:
x
1. \-pct::get_pct_zones("isle-of-wight") test-get-pct.R:11:2
2. \-pct::get_pct(...)
3. \-sf::read_sf(u_file)
4. +-sf::st_read(...)
5. \-sf:::st_read.character(...)
6. \-sf:::CPL_read_ogr(...)
[ FAIL 1 | WARN 1 | SKIP 1 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'cycling-potential-uk.Rmd' using rmarkdown
--- finished re-building 'cycling-potential-uk.Rmd'
--- re-building 'km-cycled.Rmd' using rmarkdown
Warning in CPL_read_ogr(dsn, layer, query, as.character(options), quiet, :
GDAL Error 1: SSL certificate problem: unable to get local issuer certificate
Quitting from lines 31-37 (km-cycled.Rmd)
Error: processing vignette 'km-cycled.Rmd' failed with diagnostics:
Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/oxfordshire/rnet_full.geojson"; The file doesn't seem to exist.
--- failed re-building 'km-cycled.Rmd'
--- re-building 'pct-international.Rmd' using rmarkdown
--- finished re-building 'pct-international.Rmd'
--- re-building 'pct.Rmd' using rmarkdown
Linking to GEOS 3.6.2, GDAL 3.0.4, PROJ 7.0.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 115-117 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/msoa/isle-of-wight/c.geojson"; The file doesn't seem to exist.
--- failed re-building 'pct.Rmd'
--- re-building 'pct_training.Rmd' using rmarkdown
Quitting from lines 238-243 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/msoa/isle-of-wight/z.geojson"; The file doesn't seem to exist.
--- failed re-building 'pct_training.Rmd'
--- re-building 'uk-cities.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Linking to GEOS 3.6.2, GDAL 3.0.4, PROJ 7.0.0
Quitting from lines 45-47 (uk-cities.Rmd)
Error: processing vignette 'uk-cities.Rmd' failed with diagnostics:
Cannot open "https://github.com/npct/pct-outputs-regional-notR/raw/master/commute/lsoa/wales/z.geojson"; The file doesn't seem to exist.
--- failed re-building 'uk-cities.Rmd'
SUMMARY: processing the following files failed:
'km-cycled.Rmd' 'pct.Rmd' 'pct_training.Rmd' 'uk-cities.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘km-cycled.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
--- finished re-building ‘km-cycled.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 277-281 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘pct_training.Rmd’
--- re-building ‘uk-cities.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Linking to GEOS 3.6.4, GDAL 2.2.4, PROJ 5.2.0
--- finished re-building ‘uk-cities.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘km-cycled.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
--- finished re-building ‘km-cycled.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Linking to GEOS 3.9.1, GDAL 3.2.3, PROJ 7.2.1
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 277-281 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct_training.Rmd’
--- re-building ‘uk-cities.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Linking to GEOS 3.9.1, GDAL 3.2.3, PROJ 7.2.1
--- finished re-building ‘uk-cities.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.9.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘cycling-potential-uk.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘cycling-potential-uk.Rmd’
--- re-building ‘km-cycled.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
Warning in st_centroid.sf(rnet) :
st_centroid assumes attributes are constant over geometries of x
tmap mode set to plotting
--- finished re-building ‘km-cycled.Rmd’
--- re-building ‘pct-international.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 109-116 (pct-international.Rmd)
Error: processing vignette 'pct-international.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct-international.Rmd’
--- re-building ‘pct.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Linking to GEOS 3.8.1, GDAL 3.2.1, PROJ 7.2.1
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 169-175 (pct.Rmd)
Error: processing vignette 'pct.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct.Rmd’
--- re-building ‘pct_training.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Quitting from lines 277-281 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
invalid 'path' argument
--- failed re-building ‘pct_training.Rmd’
--- re-building ‘uk-cities.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Linking to GEOS 3.8.1, GDAL 3.2.1, PROJ 7.2.1
--- finished re-building ‘uk-cities.Rmd’
SUMMARY: processing the following files failed:
‘pct-international.Rmd’ ‘pct.Rmd’ ‘pct_training.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 0.8.0
Check: installed package size
Result: NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
doc 8.1Mb
Flavor: r-release-windows-ix86+x86_64
Version: 0.8.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'cycling-potential-uk.Rmd' using rmarkdown
--- finished re-building 'cycling-potential-uk.Rmd'
--- re-building 'km-cycled.Rmd' using rmarkdown
Quitting from lines 42-46 (km-cycled.Rmd)
Error: processing vignette 'km-cycled.Rmd' failed with diagnostics:
Evaluation error: Found 1 feature with invalid spherical geometry.
[134] Loop 0 is not valid: Edge 38 has duplicate vertex with edge 41.
--- failed re-building 'km-cycled.Rmd'
--- re-building 'pct-international.Rmd' using rmarkdown
--- finished re-building 'pct-international.Rmd'
--- re-building 'pct.Rmd' using rmarkdown
Linking to GEOS 3.9.0, GDAL 3.2.1, PROJ 7.2.1
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
--- finished re-building 'pct.Rmd'
--- re-building 'pct_training.Rmd' using rmarkdown
Legend for line widths not available in view mode.
Quitting from lines 353-373 (pct_training.Rmd)
Error: processing vignette 'pct_training.Rmd' failed with diagnostics:
could not find function "st_geometry"
--- failed re-building 'pct_training.Rmd'
--- re-building 'uk-cities.Rmd' using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Linking to GEOS 3.9.0, GDAL 3.2.1, PROJ 7.2.1
--- finished re-building 'uk-cities.Rmd'
SUMMARY: processing the following files failed:
'km-cycled.Rmd' 'pct_training.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-ix86+x86_64