Mutation Annotation Format (MAF) is a tabular data format used for storing genetic mutation data. For example, The Cancer Genome Atlas (TCGA) project has made MAF files from each project publicly available. This package contains a set of tools to easily create an HTML dashboard to summarize and visualize data from MAF file. The resulting HTML file serves as a self-contained report that can be used to explore the result. Mayank Tandon & Ashish Jain (2020) <doi:10.5281/zenodo.4472978>.
| Version: | 0.1.0 |
| Depends: | R (≥ 4.0.0), rmarkdown (≥ 2.5.0), knitr (≥ 1.3), htmltools (≥ 0.5.0), ggplot2 (≥ 2.3.3), TCGAbiolinks (≥ 2.14.1) |
| Imports: | DT (≥ 0.16.0), flexdashboard (≥ 0.5.2), maftools (≥ 2.0.0), bsplus (≥ 0.1.2), crosstalk (≥ 1.1.0), plotly (≥ 4.9.2), canvasXpress (≥ 1.29.0), dplyr (≥ 1.0.2), ComplexHeatmap (≥ 2.2.0), circlize (≥ 0.4.11), RColorBrewer (≥ 1.1.0), ggbeeswarm (≥ 0.6.0), ensurer (≥ 1.1.0), data.table (≥ 1.13.2), reshape2 (≥ 1.4.4), GenomicRanges (≥ 1.38.0), IRanges (≥ 2.20.0), pheatmap (≥ 1.0.0) |
| Suggests: | jsonlite |
| Published: | 2021-02-08 |
| Author: | Mayank Tandon [aut], Ashish Jain [aut, cre], Frederick National Laboratory For Cancer Research [cph] |
| Maintainer: | Ashish Jain <ashish.jain2 at nih.gov> |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| URL: | https://github.com/ashishjain1988/MAFDash/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MAFDash results |
| Reference manual: | MAFDash.pdf |
| Vignettes: |
Advanced Example Customizing MAFDash Quick Start |
| Package source: | MAFDash_0.1.0.tar.gz |
| Windows binaries: | r-devel: MAFDash_0.1.0.zip, r-release: MAFDash_0.1.0.zip, r-oldrel: MAFDash_0.1.0.zip |
| macOS binaries: | r-release (arm64): not available, r-release (x86_64): not available, r-oldrel: not available |
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