PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation
The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is included for reference and examples.
| Version: | 1.3.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | BGLR, qtl, rrBLUP, stats, utils, methods, parallel |
| Suggests: | knitr, rmarkdown |
| Published: | 2021-02-07 |
| Author: | Tyler Tiede [aut],
Jeffrey Neyhart 
[aut, ctb, cre],
Mohsen Mohammadi
[ctb],
Kevin Smith [ctb] |
| Maintainer: | Jeffrey Neyhart <neyhartje at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | PopVar results |
Downloads:
| Reference manual: | PopVar.pdf |
| Vignettes: |
Using 'PopVar' |
| Package source: | PopVar_1.3.0.tar.gz |
| Windows binaries: | r-devel: PopVar_1.3.0.zip, r-release: PopVar_1.3.0.zip, r-oldrel: PopVar_1.3.0.zip |
| macOS binaries: | r-release (arm64): PopVar_1.3.0.tgz, r-release (x86_64): PopVar_1.3.0.tgz, r-oldrel: PopVar_1.3.0.tgz |
| Old sources: | PopVar archive |
Linking:
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