Inbreeding-purging analysis of pedigreed populations, including the computation of the inbreeding coefficient, partial, ancestral and purged inbreeding coefficients, and measures of the opportunity of purging related to the individual reduction of inbreeding load. In addition, functions to calculate the effective population size and other parameters relevant to population genetics are included. Caballero A. and Toro M.A. (2000) <doi:10.1017/s0016672399004449>. García-Dorado A., Wang J. and López-Cortegano E. (2016) <doi:10.1534/g3.116.032425>. Gulisija D. and Crow J.F. (2007) <doi:10.1111/j.1558-5646.2007.00088.x>. Gutiérrez J.P., Cervantes I., Goyache F. (2009) <doi:10.1111/j.1439-0388.2009.00810.x>. López-Cortegano E., Bersabé D., Wang J., García-Dorado A. (2018) <doi:10.1038/s41437-017-0045-y>.
| Version: | 1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | doSNOW (≥ 1.0.19), foreach (≥ 1.5.1), parallel, progress (≥ 1.2.2), Rcpp (≥ 1.0.5), RcppProgress (≥ 0.4.2) |
| LinkingTo: | Rcpp, RcppProgress |
| Suggests: | caret (≥ 6.0-86), coda (≥ 0.19-4), dplyr (≥ 1.0.0), e1071 (≥ 1.7-4), ggplot2 (≥ 3.3.1), glmnet (≥ 4.0-2), gtable (≥ 0.3.0), knitr (≥ 1.28), magrittr (≥ 1.5), pander (≥ 0.6.3), plyr (≥ 1.8.6), purrr (≥ 0.3.4), rmarkdown (≥ 2.2), scales (≥ 1.1.1), stringr (≥ 1.4.0), testthat (≥ 2.3.2), tibble (≥ 3.0.1), tidyr (≥ 1.1.0), tidyselect (≥ 1.1.0) |
| Published: | 2021-05-10 |
| Author: | Eugenio López-Cortegano [aut, cre] |
| Maintainer: | Eugenio López-Cortegano <elcortegano at gmail.com> |
| BugReports: | https://gitlab.com/elcortegano/purgeR/-/issues/ |
| License: | GPL-2 |
| URL: | https://gitlab.com/elcortegano/purgeR/ |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | purgeR results |
| Reference manual: | purgeR.pdf |
| Vignettes: |
Inbreeding and Purging Estimates purgeR tutorial |
| Package source: | purgeR_1.1.tar.gz |
| Windows binaries: | r-devel: purgeR_1.1.zip, r-devel-UCRT: purgeR_1.1.zip, r-release: purgeR_1.1.zip, r-oldrel: purgeR_1.1.zip |
| macOS binaries: | r-release (arm64): purgeR_1.1.tgz, r-release (x86_64): purgeR_1.1.tgz, r-oldrel: purgeR_1.1.tgz |
| Old sources: | purgeR archive |
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