Functions for visualizing and analyzing Vectra Immunofluorescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach. The permutation framework was proposed in Wilson et. al (2021) <doi:10.1101/2021.04.27.21256104>.
Version: | 1.0.0 |
Depends: | R (≥ 3.5.0) |
Imports: | magrittr, dplyr, tidyr, ggplot2, scales, stringr, ggdark, viridisLite, crayon, grDevices, Surrogate, purrr, janitor, rlang, modelr, plyr, tibble, spatstat.geom, spatstat.core, RColorBrewer, stats |
Suggests: | knitr, rmarkdown, testthat |
Published: | 2021-05-14 |
Author: | Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Brooke Fridley [cph], Fridley Lab [cre] |
Maintainer: | Fridley Lab <fridley.lab at moffitt.org> |
BugReports: | https://github.com/FridleyLab/spatialTIME/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/FridleyLab/spatialTIME |
NeedsCompilation: | no |
CRAN checks: | spatialTIME results |
Reference manual: | spatialTIME.pdf |
Vignettes: |
Introduction to spatialTIME |
Package source: | spatialTIME_1.0.0.tar.gz |
Windows binaries: | r-devel: spatialTIME_1.0.0.zip, r-release: spatialTIME_1.0.0.zip, r-oldrel: spatialTIME_1.0.0.zip |
macOS binaries: | r-release (arm64): spatialTIME_1.0.0.tgz, r-release (x86_64): spatialTIME_1.0.0.tgz, r-oldrel: spatialTIME_1.0.0.tgz |
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