Functions for visualizing and analyzing Vectra Immunofluorescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach. The permutation framework was proposed in Wilson et. al (2021) <doi:10.1101/2021.04.27.21256104>.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | magrittr, dplyr, tidyr, ggplot2, scales, stringr, ggdark, viridisLite, crayon, grDevices, Surrogate, purrr, janitor, rlang, modelr, plyr, tibble, spatstat.geom, spatstat.core, RColorBrewer, stats |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2021-05-14 |
| Author: | Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Brooke Fridley [cph], Fridley Lab [cre] |
| Maintainer: | Fridley Lab <fridley.lab at moffitt.org> |
| BugReports: | https://github.com/FridleyLab/spatialTIME/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/FridleyLab/spatialTIME |
| NeedsCompilation: | no |
| CRAN checks: | spatialTIME results |
| Reference manual: | spatialTIME.pdf |
| Vignettes: |
Introduction to spatialTIME |
| Package source: | spatialTIME_1.0.0.tar.gz |
| Windows binaries: | r-devel: spatialTIME_1.0.0.zip, r-release: spatialTIME_1.0.0.zip, r-oldrel: spatialTIME_1.0.0.zip |
| macOS binaries: | r-release (arm64): spatialTIME_1.0.0.tgz, r-release (x86_64): spatialTIME_1.0.0.tgz, r-oldrel: spatialTIME_1.0.0.tgz |
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