Complete work flow for the analysis of pharmacokinetic pharmacodynamic (PKPD), physiologically-based pharmacokinetic (PBPK) and systems pharmacology models including: creation of ordinary differential equation-based models, pooled parameter estimation, individual/population based simulations, rule-based simulations for clinical trial design and modeling assays, deployment with a customizable 'Shiny' app, and non-compartmental analysis. System-specific analysis templates can be generated and each element includes integrated reporting with 'PowerPoint' and 'Word'.
Version: | 1.0.5 |
Depends: | R (≥ 3.5.0) |
Imports: | deSolve, dplyr (≥ 1.0.0), digest, doParallel, flextable, foreach, gridExtra, grid, ggplot2, knitr, magrittr, MASS, officer (≥ 0.3.7), optimx, PKNCA, pso, readxl, rmarkdown, rhandsontable, rstudioapi, scales, stats, stringr, shiny |
Suggests: | GA, GGally, gridGraphics, webshot, testthat, ggrepel |
Published: | 2021-04-25 |
Author: | John Harrold |
Maintainer: | John Harrold <john.m.harrold at gmail.com> |
BugReports: | https://github.com/john-harrold/ubiquity/issues |
License: | BSD_2_clause + file LICENSE |
URL: | https://ubiquity.tools/rworkflow |
NeedsCompilation: | no |
SystemRequirements: | Perl |
Materials: | README |
CRAN checks: | ubiquity results |
Reference manual: | ubiquity.pdf |
Vignettes: |
Deployment Estimation Language Noncompartmental Analysis Report Generation Simulation Titration/Rule-Based Simulations |
Package source: | ubiquity_1.0.5.tar.gz |
Windows binaries: | r-devel: ubiquity_1.0.5.zip, r-release: ubiquity_1.0.5.zip, r-oldrel: ubiquity_1.0.5.zip |
macOS binaries: | r-release (arm64): ubiquity_1.0.5.tgz, r-release (x86_64): ubiquity_1.0.5.tgz, r-oldrel: ubiquity_1.0.5.tgz |
Old sources: | ubiquity archive |
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